Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_3361Hopanoid biosynthesis associated radical SAM protein HpnH. (402 aa)    
Predicted Functional Partners:
Plim_1904
KEGG: aba:Acid345_1740 squalene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: Prenyltransferase/squalene oxidase.
   
 0.907
Plim_0903
Squalene cyclase-like protein; KEGG: squalene-hopene-cyclase, putative; K06045 squalene-hopene cyclase.
 
   
 0.781
Plim_3348
Hopanoid biosynthesis associated RND transporter like protein HpnN.
 
   
 0.771
Plim_1743
PFAM: purine or other phosphorylase family 1; KEGG: noc:Noc_1319 purine phosphorylase family protein 1.
 
   
 0.702
Plim_3204
Squalene-associated FAD-dependent desaturase.
 
  
 0.652
Plim_3360
tRNA/rRNA methyltransferase (SpoU).
       0.620
Plim_0386
PFAM: protein of unknown function DUF1597; KEGG: mca:MCA2112 hypothetical protein.
  
     0.450
Plim_3362
Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
       0.430
Plim_1555
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dps:DP1734 uroporphyrinogen III synthase/methyltransferase (HemD+CobA).
  
  
 0.413
Plim_3071
Transposase IS4 family protein.
  
     0.409
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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