STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3388Type II secretion system protein. (362 aa)    
Predicted Functional Partners:
Plim_0156
PFAM: type II secretion system protein; KEGG: afw:Anae109_0728 general secretion pathway protein F.
  
  
 
0.920
Plim_3387
Type II secretion system protein E.
 
   0.805
Plim_3389
Type II secretory pathway component PulF-like protein.
 
     0.725
Plim_1369
PFAM: type II secretion system protein E; KEGG: type II secretion system protein E; K02454 general secretion pathway protein E.
  
   0.656
Plim_0410
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: scl:sce4467 type IV pilus biogenesis protein PilB.
  
   0.652
Plim_0408
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_5788 type IV-A pilus assembly ATPase PilB.
  
   0.644
Plim_4189
Type II secretion system protein E; KEGG: predicted gene, 100042430.
  
   0.633
Plim_0426
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gsu:GSU1491 type IV pilus biogenesis protein PilB.
  
   0.627
Plim_0082
PFAM: type II secretion system protein E; KEGG: noc:Noc_2895 type II secretion system protein E.
  
   0.621
Plim_0753
PFAM: type II secretion system protein E; KEGG: sat:SYN_01549 general secretion pathway protein E.
  
   0.616
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.