STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3404Hypothetical protein. (508 aa)    
Predicted Functional Partners:
Plim_1992
PFAM: ABC-3 protein; iron dependent repressor; SMART: iron dependent repressor; KEGG: rce:RC1_2462 zinc transport system membrane protein TroD.
  
  
 0.600
Plim_1993
PFAM: ABC-3 protein; iron dependent repressor; KEGG: rce:RC1_2461 zinc transport system membrane protein TroC.
  
  
 0.600
Plim_3405
Protein of unknown function DUF1080.
  
    0.568
Plim_3159
Alkaline phosphatase.
  
   0.552
Plim_3929
FG-GAP repeat protein.
  
     0.526
Plim_0743
KEGG: atc:AGR_C_4472 hypothetical protein.
  
     0.490
Plim_2029
Hypothetical protein; KEGG: bca:BCE_A0190 cytochrome c biogenesis protein, putative.
  
     0.474
Plim_0240
PFAM: peptidase M16 domain protein; KEGG: mxa:MXAN_7497 peptidase, M16B (mitochondrial processing peptidase beta-subunit) family.
  
 
   0.468
Plim_2730
Glucosamine/galactosamine-6-phosphate isomerase.
  
     0.464
Plim_0734
PFAM: protein of unknown function DUF820; KEGG: mrd:Mrad2831_3531 hypothetical protein.
  
     0.460
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.