STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3420Carbohydrate kinase FGGY. (497 aa)    
Predicted Functional Partners:
Plim_1645
PFAM: RbsD or FucU transport; KEGG: pat:Patl_3642 RbsD or FucU transport; Belongs to the RbsD / FucU family.
 
  
 0.706
Plim_1747
PFAM: class II aldolase/adducin family protein; KEGG: sus:Acid_1334 class II aldolase/adducin family protein.
 
  
 0.645
Plim_1758
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: nar:Saro_1048 DeoR family transcriptional regulator.
   
 0.582
Plim_3419
Sulfatase; KEGG: hypothetical protein.
       0.538
Plim_1621
KEGG: psp:PSPPH_3238 hypothetical protein.
 
  
 0.495
Plim_2394
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rlt:Rleg2_6262 xylose isomerase domain protein TIM barrel.
  
     0.470
Plim_3035
Helix-turn-helix- domain containing protein AraC type; KEGG: proteophosphoglycan 5.
 
 
 
 0.443
Plim_2801
Helix-turn-helix- domain containing protein AraC type.
 
 
 
 0.431
Plim_0774
PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: hiq:CGSHiGG_09180 xylose operon regulatory protein.
 
 
 
 0.430
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.413
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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