STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3424SCP-like extracellular. (138 aa)    
Predicted Functional Partners:
Plim_2308
PFAM: inner-membrane translocator; KEGG: ade:Adeh_4259 ABC branched-chain amino acid transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
   
   0.775
Plim_0427
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_0884 anti-sigma-factor antagonist.
  
     0.711
Plim_0574
PFAM: Haemagluttinin repeat-containing protein; KEGG: dal:Dalk_0372 filamentous hemagglutinin family outer membrane protein.
 
    0.680
Plim_0329
KEGG: mxa:MXAN_6236 putative polysaccharide- degrading enzyme.
   
    0.627
Plim_0456
SMART: Parallel beta-helix repeat; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel.
   
    0.627
Plim_3846
Parallel beta-helix repeat protein; KEGG: hypothetical protein LOC100134400.
   
    0.627
Plim_2932
Hypothetical protein.
 
    0.576
Plim_0167
Hypothetical protein; KEGG: proteophosphoglycan ppg4.
  
     0.555
Plim_1629
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fibrocystin-L-like protein.
  
     0.513
Plim_2781
Hypothetical protein.
  
     0.499
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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