Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3429Transport-associated protein. (412 aa)    
Predicted Functional Partners:
Plim_0418
PFAM: protein of unknown function DUF883 ElaB; KEGG: CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
    0.834
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.774
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
  
     0.773
Plim_1805
Hypothetical protein.
  
     0.773
Plim_4206
Xylose isomerase domain protein TIM barrel.
  
     0.770
Plim_2201
KEGG: bja:blr0521 hypothetical protein.
  
     0.768
Plim_3249
Hypothetical protein.
  
     0.767
Plim_3766
Hypothetical protein.
  
     0.767
Plim_4190
NolW domain protein; KEGG: similar to ELKS/RAB6-interacting/CAST family member 2.
  
     0.767
Plim_1407
TIGRFAM: heme-binding protein; KEGG: pca:Pcar_0624 L-sorbosone dehydrogenase.
  
     0.765
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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