STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3435Conserved hypothetical protein. (114 aa)    
Predicted Functional Partners:
Plim_1994
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_2839 ABC transporter related.
  
 
 0.960
Plim_1995
PFAM: periplasmic solute binding protein; KEGG: rce:RC1_2459 periplasmic zinc-binding protein TroA; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.816
Plim_3434
Regulatory protein ArsR.
       0.678
Plim_0747
PFAM: ferric-uptake regulator; KEGG: scl:sce7206 FUR family regulator protein; Belongs to the Fur family.
 
  
 0.525
folD
Methylenetetrahydrofolate dehydrogenase (NADP(+)); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.498
Plim_1476
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mxa:MXAN_6524 CobW/P47K family protein.
 
  
 0.483
Plim_1797
PFAM: Myo-inositol-1-phosphate synthase GAPDH domain protein; Myo-inositol-1-phosphate synthase; KEGG: sfu:Sfum_1982 inositol-3-phosphate synthase.
  
     0.431
lolD-2
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
    0.413
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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