Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3442Oxidoreductase domain protein. (351 aa)    
Predicted Functional Partners:
Plim_2996
Oxidoreductase domain protein.
  
     0.766
Plim_3234
Oxidoreductase domain protein.
  
     0.738
Plim_1283
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_4454 oxidoreductase domain- containing protein.
  
     0.658
Plim_3712
Oxidoreductase domain protein; KEGG: Srrm2; serine/arginine repetitive matrix 2.
  
     0.598
Plim_2348
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO0445 putative oxidoreductase/dehydrogenase protein.
  
     0.594
Plim_0917
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pca:Pcar_1256 dehydrogenase.
  
     0.581
Plim_3818
Oxidoreductase domain protein; KEGG: hypothetical protein.
  
     0.566
Plim_1532
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_3331 oxidoreductase domain- containing protein.
  
     0.555
Plim_1812
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_4711 oxidoreductase domain- containing protein.
  
     0.537
Plim_3510
Oxidoreductase domain protein.
  
     0.515
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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