STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3447Glycosyl hydrolase BNR repeat-containing protein. (559 aa)    
Predicted Functional Partners:
Plim_0354
PFAM: sulfatase; KEGG: sus:Acid_2580 sulfatase.
  
 
  0.932
Plim_3913
Sulfatase.
  
 
  0.932
Plim_2738
Sulfatase.
  
 
  0.927
Plim_2856
Neuraminidase (sialidase)-like protein; KEGG: proteophosphoglycan 5.
  
  
 
0.919
Plim_0789
PFAM: sulfatase; KEGG: smd:Smed_3791 sulfatase.
    
  0.901
Plim_1520
PFAM: sulfatase; KEGG: pat:Patl_0881 sulfatase.
    
  0.901
Plim_1647
PFAM: sulfatase; KEGG: met:M446_6751 sulfatase.
    
  0.901
Plim_1879
PFAM: sulfatase; KEGG: pat:Patl_0881 sulfatase.
    
  0.901
Plim_2371
PFAM: sulfatase; KEGG: rle:RL1236 putative arylsulfatase.
    
  0.901
Plim_2416
Hypothetical protein; KEGG: sus:Acid_2651 putative O-antigen related protein.
 
     0.705
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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