STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3478Zinc/iron permease. (411 aa)    
Predicted Functional Partners:
Plim_1011
Hypothetical protein; KEGG: hne:HNE_2881 alpha/beta fold family hydrolase.
  
     0.666
Plim_3497
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.642
Plim_1459
KEGG: Hypothetical protein CBG02561.
  
     0.641
Plim_2201
KEGG: bja:blr0521 hypothetical protein.
  
     0.626
Plim_3001
Von Willebrand factor type A.
  
     0.613
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.602
Plim_1277
PFAM: Colicin V production protein; KEGG: rfr:Rfer_2684 colicin V production protein.
  
     0.598
Plim_3626
Xylose isomerase domain protein TIM barrel; KEGG: similar to splicing coactivator subunit SRm300.
  
     0.585
Plim_2082
KEGG: Hypothetical protein CBG02561.
  
     0.578
Plim_3159
Alkaline phosphatase.
 
 
   0.567
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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