STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3482ABC transporter related protein. (237 aa)    
Predicted Functional Partners:
Plim_0127
PFAM: protein of unknown function DUF214; KEGG: saz:Sama_1472 ABC transporter permease protein.
 
 0.987
Plim_3290
ABC transporter related protein.
 
    
0.899
Plim_0070
Heme exporter protein CcmA; KEGG: bcr:BCAH187_A1915 ABC transporter, ATP- binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.859
Plim_3659
Protein of unknown function DUF214; KEGG: eba:ebA7253 hypothetical protein.
  
   0.851
Plim_3164
Protein of unknown function DUF214.
 
 
 0.829
Plim_1396
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6003 ABC transporter, ATP-binding protein.
 
    
0.790
Plim_3483
Efflux transporter, RND family, MFP subunit.
 
   0.774
Plim_3484
Outer membrane protein-like protein; KEGG: NACA, TEBP; nascent polypeptide-associated complex alpha subunit.
   
   0.668
Plim_3013
ABC transporter related protein.
 
    
0.666
Plim_2518
PFAM: protein of unknown function DUF214; KEGG: glo:Glov_0758 lipoprotein releasing system, transmembrane protein, LolC/E family.
  
   0.656
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.