Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_3483Efflux transporter, RND family, MFP subunit. (598 aa)    
Predicted Functional Partners:
Plim_3484
Outer membrane protein-like protein; KEGG: NACA, TEBP; nascent polypeptide-associated complex alpha subunit.
  
   0.848
Plim_3485
Regulatory protein MarR.
       0.813
Plim_0127
PFAM: protein of unknown function DUF214; KEGG: saz:Sama_1472 ABC transporter permease protein.
 
   0.797
Plim_3482
ABC transporter related protein.
 
   0.774
Plim_0558
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: scl:sce1627 RND family efflux transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.531
Plim_0304
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.456
Plim_1115
PFAM: secretion protein HlyD family protein; KEGG: met:M446_0165 secretion protein HlyD family protein.
  
     0.443
Plim_3164
Protein of unknown function DUF214.
  
   0.438
Plim_3659
Protein of unknown function DUF214; KEGG: eba:ebA7253 hypothetical protein.
  
 
   0.435
Plim_3122
Phosphopantetheine-binding protein.
  
     0.414
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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