STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3518Tetratricopeptide TPR_2 repeat protein. (320 aa)    
Predicted Functional Partners:
Plim_2188
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: BRCT domain protein; Tetratricopeptide domain protein; KEGG: scl:sce3861 MerR family transcriptional regulator.
 
 
 0.786
Plim_2561
Tetratricopeptide TPR_2 repeat protein.
  
     0.768
Plim_2357
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mno:Mnod_2951 peptidase C14 caspase catalytic subunit P20.
  
     0.762
Plim_1858
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: predicted protein.
  
     0.726
Plim_2555
Tetratricopeptide TPR_2 repeat protein.
 
   0.691
Plim_0431
PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein.
  
     0.664
Plim_2882
Tetratricopeptide TPR_2 repeat protein; KEGG: predicted gene, 100042430.
 
     0.660
Plim_1771
PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein; KEGG: pca:Pcar_3102 TPR repeat-containing protein.
  
 
   0.572
Plim_3244
Tetratricopeptide TPR_2 repeat protein.
  
     0.541
Plim_3500
Histone deacetylase.
  
 
  0.528
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.