Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
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[Homology]
Score
Nb031Nb031; nematoblast specific protein. (446 aa)    
Predicted Functional Partners:
Plim_0037
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_2550 oxidoreductase domain- containing protein.
  
     0.482
Plim_0038
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2979 hypothetical protein.
  
     0.459
Plim_0676
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2979 hypothetical protein.
  
     0.459
Plim_3114
Hypothetical protein; KEGG: bpm:BURPS1710b_A2370 200 kDa antigen p200, putative.
  
     0.455
Plim_3796
Protein of unknown function DUF1080.
  
     0.434
Plim_3945
Protein of unknown function DUF1080; KEGG: bte:BTH_II2095 diaminopimelate decarboxylase, putative.
  
     0.429
Plim_3524
Abi family protein.
       0.415
Plim_2550
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; metalloenzyme domain protein; KEGG: hch:HCH_03222 hemopexin repeat-containing protein.
  
     0.403
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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