STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3531Protein of unknown function DUF990. (299 aa)    
Predicted Functional Partners:
Plim_1396
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6003 ABC transporter, ATP-binding protein.
 
  
 0.872
Plim_0739
PFAM: protein of unknown function DUF990; KEGG: mxa:MXAN_6001 hypothetical protein.
 
  
 0.865
Plim_0255
Hypothetical protein.
  
     0.624
Plim_3626
Xylose isomerase domain protein TIM barrel; KEGG: similar to splicing coactivator subunit SRm300.
  
     0.571
Plim_3530
Aminotransferase class I and II.
       0.556
Plim_2434
5'-nucleotidase/2' 3'-cyclic phosphodiesterase-like esterase; KEGG: sfu:Sfum_1622 40-residue YVTN family beta- propeller repeat protein.
  
     0.512
Plim_2203
KEGG: dal:Dalk_1262 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
  
     0.499
Plim_1560
KEGG: azo:azo0386 hypothetical protein.
  
     0.497
Plim_2735
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
     0.496
Plim_0024
PFAM: translation initiation factor SUI1; KEGG: bpy:Bphyt_5669 translation initiation factor SUI1.
  
     0.495
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.