STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3588Endonuclease/exonuclease/phosphatase. (286 aa)    
Predicted Functional Partners:
Plim_3019
Hypothetical protein; KEGG: Spty2d1, RGD1560454_predicted; SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae).
  
     0.627
Plim_4053
Protein of unknown function DUF1080.
  
     0.526
Plim_0901
PFAM: lipopolysaccharide kinase; KEGG: cja:CJA_0503 lipopolysaccharide core biosynthesis protein WaaP.
  
     0.495
Plim_1047
PFAM: transposase IS4 family protein; KEGG: pol:Bpro_1661 transposase, IS4 family.
  
     0.483
Plim_3428
Methyltransferase type 11.
  
     0.474
Plim_3644
Protein of unknown function DUF6 transmembrane.
 
     0.470
Plim_3966
Protein of unknown function DUF1330.
  
     0.462
Plim_1206
Hypothetical protein; KEGG: similar to Stretchin-Mlck CG18255-PA, isoform A.
  
     0.453
Plim_2378
KEGG: hypothetical protein.
  
     0.442
Plim_3589
Hypothetical protein.
       0.436
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.