Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_3612Phage terminase-like protein protein large subunit-like protein. (495 aa)    
Predicted Functional Partners:
Plim_3609
AAA ATPase.
 
     0.841
Plim_3545
Portal protein lambda.
 
    0.787
Plim_3718
ParB domain protein nuclease.
 
     0.769
Plim_3611
Hypothetical protein.
       0.732
Plim_3065
Hypothetical protein.
  
     0.613
Plim_1202
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ade:Adeh_1905 HNH endonuclease.
  
  
 0.572
Plim_1211
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mxa:MXAN_3347 HNH endonuclease domain protein.
  
  
 0.572
Plim_1627
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.542
Plim_0655
PFAM: Pericardin like; KEGG: GI11778 gene product from transcript GI11778- RA.
  
     0.541
Plim_3645
Helix-turn-helix domain protein.
  
     0.532
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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