STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3628FG-GAP repeat protein. (829 aa)    
Predicted Functional Partners:
Plim_4208
Tetratricopeptide TPR_2 repeat protein.
  
     0.766
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
     0.761
Plim_1666
PFAM: isochorismatase hydrolase; KEGG: sus:Acid_1892 isochorismatase hydrolase.
  
   
 0.753
Plim_0839
ATPase-like protein involved in DNA repair; KEGG: liver stage antigen.
  
     0.730
Plim_3516
Hypothetical protein.
  
     0.718
Plim_1021
Exporter of the RND superfamily protein-like protein; KEGG: vok:COSY_0866 hypothetical protein.
  
     0.704
Plim_0255
Hypothetical protein.
  
     0.702
Plim_3941
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
  
    0.692
Plim_0675
SMART: Tetratricopeptide domain protein; KEGG: SLEI family protein.
  
    0.689
Plim_3231
Hypothetical protein.
  
     0.686
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.