Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3631Xylose isomerase domain protein TIM barrel. (275 aa)    
Predicted Functional Partners:
Plim_0391
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rde:RD1_3873 hypothetical protein.
  
     0.766
Plim_2156
KEGG: sus:Acid_4453 transmembrane prediction; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.749
Plim_1208
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_0027 xylose isomerase domain- containing protein.
  
     0.706
Plim_0883
KEGG: sus:Acid_5331 hypothetical protein.
  
     0.666
Plim_2979
Hypothetical protein.
  
    0.620
Plim_1450
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.584
Plim_1987
KEGG: sus:Acid_5332 hypothetical protein.
  
     0.572
Plim_4107
Hypothetical protein.
  
    0.570
Plim_1387
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sus:Acid_3556 hydrolase.
  
     0.560
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
  
     0.550
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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