Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_3643Conserved hypothetical protein. (392 aa)    
Predicted Functional Partners:
Plim_1148
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pfl:PFL_5545 type I phosphodiesterase/nucleotide pyrophosphatase family protein.
  
     0.775
Plim_1548
KEGG: cvi:CV_2835 hypothetical protein.
 
     0.775
Plim_1549
PFAM: TatD-related deoxyribonuclease; KEGG: cvi:CV_2836 hypothetical protein.
 
     0.775
Plim_2631
UbiA prenyltransferase.
  
     0.775
Plim_3316
Xylose isomerase domain protein TIM barrel.
  
     0.685
Plim_1439
Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.
  
     0.606
Plim_1580
Large, multifunctional secreted protein.
  
     0.600
Plim_1797
PFAM: Myo-inositol-1-phosphate synthase GAPDH domain protein; Myo-inositol-1-phosphate synthase; KEGG: sfu:Sfum_1982 inositol-3-phosphate synthase.
 
     0.565
Plim_3644
Protein of unknown function DUF6 transmembrane.
       0.494
Plim_3642
Conserved hypothetical protein.
       0.481
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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