STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3656Protein of unknown function DUF1559. (369 aa)    
Predicted Functional Partners:
Plim_3655
Hypothetical protein.
       0.773
Plim_3351
Hypothetical protein.
  
     0.647
Plim_4208
Tetratricopeptide TPR_2 repeat protein.
  
     0.618
Plim_3452
Hypothetical protein.
  
     0.597
Plim_1274
KEGG: scl:sce4409 hypothetical protein.
  
     0.595
Plim_0167
Hypothetical protein; KEGG: proteophosphoglycan ppg4.
  
     0.593
Plim_0930
Hypothetical protein; KEGG: dal:Dalk_3255 4-amino-4-deoxy-L-arabinose transferase.
  
     0.519
Plim_0076
TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM.
  
     0.476
Plim_4194
Tetratricopeptide TPR_2 repeat protein.
  
     0.474
Plim_3424
SCP-like extracellular.
  
     0.434
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.