STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3684Alpha amylase catalytic region. (663 aa)    
Predicted Functional Partners:
Plim_1782
TIGRFAM: ethanolamine transporter; PFAM: amino acid permease-associated region; KEGG: rpd:RPD_2980 ethanolamine permease.
   
 0.979
Plim_3386
Amino acid permease-associated region.
   
 0.979
Plim_3683
HAD-superfamily hydrolase, subfamily IIB.
 
 
 
 0.867
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.698
Plim_3685
GCN5-related N-acetyltransferase.
     
 0.629
Plim_3980
Glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.628
Plim_2700
Glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.623
Plim_0413
PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mes:Meso_2421 glycoside hydrolase, family 13- like.
 
  
 0.562
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.497
Plim_3493
Alpha-glucan phosphorylase.
  
 
 0.494
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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