Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3701Conserved hypothetical protein. (354 aa)    
Predicted Functional Partners:
Plim_3314
Hypothetical protein.
  
     0.692
Plim_1975
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.670
Plim_1785
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.
  
     0.667
Plim_2734
Membrane-bound dehydrogenase domain protein.
  
     0.640
Plim_0902
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: sus:Acid_3123 putative heme-binding protein.
  
     0.634
Plim_0029
KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.
  
     0.614
Plim_0665
Hypothetical protein; KEGG: pen:PSEEN1886 arylesterase.
  
 
   0.594
Plim_1723
TIGRFAM: heme-binding protein; KEGG: mrd:Mrad2831_3094 glucose/sorbosone dehydrogenase-like protein.
  
     0.590
Plim_0666
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: mfa:Mfla_1033 L-sorbosone dehydrogenase, putative.
  
     0.585
Plim_3308
Heme-binding protein.
  
     0.584
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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