STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3729WD40 domain protein beta Propeller. (354 aa)    
Predicted Functional Partners:
Plim_3899
Peptidase M28.
    0.970
Plim_0862
PFAM: peptidase M28; KEGG: afw:Anae109_2846 peptidase M28.
     0.884
Plim_0726
KEGG: lip:LI1093 outer membrane protein and related peptidoglycan-associated (LipO)proteins.
  
  
 0.549
Plim_3586
Tetratricopeptide TPR_2 repeat protein.
  
  
 0.549
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.528
Plim_2398
KEGG: mpt:Mpe_A2083 hypothetical protein.
  
     0.503
Plim_3067
YD repeat protein; KEGG: bpm:BURPS1710b_1103 hypothetical protein.
  
     0.462
Plim_1602
KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.449
Plim_2762
PAS sensor protein.
  
   
 0.444
Plim_2663
Hypothetical protein; KEGG: MUC2; mucin 2, oligomeric mucus/gel-forming; K10955 intestinal mucin-2.
  
     0.438
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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