STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_3758Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (161 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.915
Plim_3275
PAS sensor protein.
   
  
 0.876
Plim_1171
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: hypothetical protein; K00362 nitrite reductase (NAD(P)H) large subunit.
  
 
 0.855
Plim_2751
Conserved hypothetical protein.
   
  
 0.772
Plim_0153
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bpa:BPP2249 putative anti-sigma factor antagonist.
   
  
 0.460
Plim_0427
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_0884 anti-sigma-factor antagonist.
   
  
 0.460
Plim_0752
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: GA18675 gene product from transcript GA18675- RA; K00624 carnitine O-acetyltransferase.
   
  
 0.460
Plim_1390
Hypothetical protein; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA.
   
  
 0.460
Plim_1550
Hypothetical protein.
   
  
 0.460
Plim_2057
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_4200 anti-sigma-factor antagonist.
   
  
 0.460
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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