STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3761Biopolymer transport protein ExbD/TolR. (151 aa)    
Predicted Functional Partners:
Plim_3760
Biopolymer transport protein ExbD/TolR.
       0.777
Plim_3762
MotA/TolQ/ExbB proton channel.
  
   0.744
Plim_3759
Hypothetical protein.
       0.580
Plim_1275
Hypothetical protein.
  
   0.483
Plim_1808
PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: slo:Shew_2289 glycosy hydrolase family protein.
  
   0.483
Plim_3131
MotA/TolQ/ExbB proton channel.
  
   0.440
Plim_3807
MotA/TolQ/ExbB proton channel.
  
   0.440
Plim_0513
Hypothetical protein; KEGG: amc:MADE_03505 possible biopolymer transport protein, ExbB family.
   
   0.424
Plim_0746
PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_2673 MotA/TolQ/ExbB proton channel.
   
   0.424
Plim_0801
Hypothetical protein.
   
   0.424
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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