STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_3765Oxidoreductase domain protein; KEGG: Hypothetical protein CBG16424. (518 aa)    
Predicted Functional Partners:
Plim_1865
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rde:RD1_3876 oxidoreductase, putative.
  
     0.764
Plim_4116
Oxidoreductase domain protein.
  
     0.764
Plim_3766
Hypothetical protein.
 
     0.746
Plim_2198
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: sus:Acid_1518 oxidoreductase domain- containing protein.
  
     0.745
Plim_3234
Oxidoreductase domain protein.
  
     0.740
Plim_0917
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pca:Pcar_1256 dehydrogenase.
  
     0.716
Plim_3818
Oxidoreductase domain protein; KEGG: hypothetical protein.
  
     0.687
Plim_2348
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO0445 putative oxidoreductase/dehydrogenase protein.
  
     0.668
Plim_3767
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
       0.406
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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