STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3772Conserved hypothetical protein. (532 aa)    
Predicted Functional Partners:
Plim_3771
Dehydratase, YjhG/YagF family; Belongs to the IlvD/Edd family.
       0.678
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
     0.669
Plim_0574
PFAM: Haemagluttinin repeat-containing protein; KEGG: dal:Dalk_0372 filamentous hemagglutinin family outer membrane protein.
  
     0.591
Plim_0575
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD-40 repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: hypothetical protein.
  
     0.575
Plim_1705
Hypothetical protein; KEGG: sfu:Sfum_1622 40-residue YVTN family beta- propeller repeat protein.
  
   0.571
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
     0.526
Plim_3095
Secretory protein YscJ/FliF family protein.
  
     0.520
Plim_0034
Biotin apo-protein ligase-related protein; KEGG: hypothetical protein.
  
     0.497
Plim_3773
PGAP1 family protein.
       0.495
Plim_2317
KEGG: net:Neut_1053 hypothetical protein.
  
     0.492
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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