STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3779Pectate lyase. (350 aa)    
Predicted Functional Partners:
Plim_1924
Pectin acetylesterase; KEGG: sus:Acid_1173 alpha/beta hydrolase.
 
   
 0.588
Plim_2905
Xylanase.
 
   
 0.544
Plim_2636
Sialate O-acetylesterase.
  
   
 0.522
Plim_1750
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: sus:Acid_0324 ethanolamine utilization protein EutN/carboxysome structural protein CcmL.
  
     0.420
Plim_0309
KEGG: sus:Acid_1640 peptidase M14, carboxypeptidase A.
  
     0.418
Plim_0286
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_2032 hypothetical protein.
  
     0.415
Plim_3778
KWG Leptospira repeat protein.
       0.415
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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