STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3780Hypothetical protein. (823 aa)    
Predicted Functional Partners:
Plim_2090
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.772
Plim_1581
PFAM: PA14 domain protein; SMART: PA14 domain protein; KEGG: rde:RD1_3724 hypothetical protein.
  
     0.715
Plim_4033
Pyrrolo-quinoline quinone.
  
     0.709
Plim_2089
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_2265 hypothetical protein.
  
     0.692
Plim_1957
TIGRFAM: heme-binding protein; PFAM: coagulation factor 5/8 type domain protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: msl:Msil_0148 putative glucose/sorbosone dehydrogenase.
  
     0.678
Plim_2663
Hypothetical protein; KEGG: MUC2; mucin 2, oligomeric mucus/gel-forming; K10955 intestinal mucin-2.
  
     0.671
Plim_3330
Major facilitator superfamily MFS_1.
  
     0.668
Plim_2734
Membrane-bound dehydrogenase domain protein.
  
     0.663
Plim_3439
Hypothetical protein.
  
     0.660
Plim_2339
PFAM: FMN-binding domain protein; KEGG: sse:Ssed_2105 hypothetical protein.
  
     0.654
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.