Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3796Protein of unknown function DUF1080. (257 aa)    
Predicted Functional Partners:
Plim_1580
Large, multifunctional secreted protein.
 
     0.924
Plim_3672
Protein of unknown function DUF1080; KEGG: hypothetical protein LOC702215.
 
     0.801
Plim_1708
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_6142 hypothetical protein.
  
     0.773
Plim_2356
PFAM: protein of unknown function DUF1080; KEGG: pnu:Pnuc_1112 hypothetical protein.
  
     0.761
Plim_2857
Oxidoreductase domain protein.
  
     0.749
Plim_1642
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7683 xylose isomerase domain- containing protein.
 
     0.744
Plim_0006
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6296 oxidoreductase domain- containing protein.
  
     0.741
Plim_1439
Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.
 
     0.713
Plim_2385
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.684
Plim_1812
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_4711 oxidoreductase domain- containing protein.
  
     0.680
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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