Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_3825Protein of unknown function DUF1559. (318 aa)    
Predicted Functional Partners:
Plim_0076
TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM.
  
     0.565
Plim_3351
Hypothetical protein.
  
     0.565
Plim_3826
Alkaline phosphatase.
       0.522
Plim_3824
Hypothetical protein.
       0.477
Plim_0058
KEGG: mxa:MXAN_5780 putative efflux ABC transporter, permease protein PilI.
  
     0.455
Plim_2895
General secretion pathway protein G.
  
     0.436
Plim_1841
PFAM: peptidase A24A domain protein; KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD.
  
    0.435
Plim_3388
Type II secretion system protein.
  
    0.433
Plim_3827
Protein of unknown function DUF1559; KEGG: GF17743 gene product from transcript GF17743- RA.
 
    
0.424
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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