STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3846Parallel beta-helix repeat protein; KEGG: hypothetical protein LOC100134400. (1562 aa)    
Predicted Functional Partners:
Plim_3354
TPR repeat-containing protein.
  
     0.766
Plim_1805
Hypothetical protein.
  
     0.765
Plim_4190
NolW domain protein; KEGG: similar to ELKS/RAB6-interacting/CAST family member 2.
  
   
 0.747
Plim_4071
Spermine synthase.
  
    0.743
Plim_1336
Membrane protein-like protein.
  
     0.740
Plim_2201
KEGG: bja:blr0521 hypothetical protein.
  
     0.737
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.735
Plim_2805
Outer membrane efflux protein.
  
     0.725
Plim_3408
KEGG: azo:azo2666 hypothetical protein.
  
     0.722
Plim_2184
PFAM: Planctomycete cytochrome C; KEGG: lch:Lcho_1986 hypothetical protein.
  
     0.719
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.