Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_3847Glycoside hydrolase family 10. (490 aa)    
Predicted Functional Partners:
Plim_3249
Hypothetical protein.
  
     0.755
Plim_2824
Protein of unknown function DUF1559.
  
     0.752
Plim_3001
Von Willebrand factor type A.
  
     0.751
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
  
     0.749
Plim_1210
TIGRFAM: conserved repeat domain protein; KEGG: conserved repeat domain precursor.
  
     0.738
Plim_0727
KEGG: aba:Acid345_2357 hypothetical protein.
  
     0.731
Plim_0381
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; KEGG: mfa:Mfla_2322 sigma 70 (RpoD).
  
     0.730
Plim_1168
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
     0.730
Plim_3122
Phosphopantetheine-binding protein.
  
     0.726
Plim_4206
Xylose isomerase domain protein TIM barrel.
  
     0.695
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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