STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3872Metal-dependent hydrolase HDOD. (321 aa)    
Predicted Functional Partners:
Plim_3873
Metal-dependent hydrolase HDOD.
 
    
0.781
Plim_3359
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
     0.660
Plim_3682
Flagellar basal body FlaE domain protein.
 
    0.654
Plim_2875
CheC domain protein.
 
     0.650
Plim_2706
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.632
Plim_0563
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: hch:HCH_02459 HD-GYP domain-containing protein.
  
 
   0.585
Plim_0811
KEGG: dde:Dde_1196 chemotaxis protein CheX, putative.
 
     0.560
flgK
Flagellar hook-associated protein FlgK.
 
     0.555
Plim_1168
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.539
Plim_2500
TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: tdn:Suden_0707 flagellar motor switch protein FliM.
 
     0.538
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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