STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_3873Metal-dependent hydrolase HDOD. (316 aa)    
Predicted Functional Partners:
Plim_3872
Metal-dependent hydrolase HDOD.
 
    
0.781
Plim_2875
CheC domain protein.
 
     0.698
Plim_0811
KEGG: dde:Dde_1196 chemotaxis protein CheX, putative.
 
     0.603
Plim_2706
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.545
Plim_0679
PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: swd:Swoo_2978 response regulator receiver modulated metal dependent phosphohydrolase.
 
     0.539
Plim_3682
Flagellar basal body FlaE domain protein.
 
    0.537
Plim_2231
SMART: AAA ATPase; KEGG: sfu:Sfum_0884 AAA ATPase.
  
     0.507
flgK
Flagellar hook-associated protein FlgK.
 
     0.503
Plim_0563
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: hch:HCH_02459 HD-GYP domain-containing protein.
  
 
   0.498
Plim_2324
(Glutamate--ammonia-ligase) adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal tra [...]
  
     0.497
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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