STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3874Capsular exopolysaccharide family; KEGG: proteophosphoglycan ppg3. (778 aa)    
Predicted Functional Partners:
Plim_4112
Polysaccharide export protein; KEGG: hypothetical protein.
 
 
 0.979
Plim_2837
Polysaccharide export protein.
  
 
 0.975
Plim_0633
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: pna:Pnap_3481 sugar transferase.
 
  
 0.969
Plim_3136
Undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.969
Plim_4167
Polysaccharide biosynthesis protein CapD.
 
  
 0.929
Plim_3669
Polysaccharide biosynthesis protein.
 
  
 0.750
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
  
 0.649
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.649
Plim_2592
Protein-tyrosine phosphatase, low molecular weight; Belongs to the SUA5 family.
 
 
 0.639
Plim_2939
Mannose-1-phosphate guanylyltransferase.
 
  
 0.620
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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