STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3875Endonuclease/exonuclease/phosphatase; KEGG: hypothetical protein LOC100150481. (387 aa)    
Predicted Functional Partners:
Plim_3019
Hypothetical protein; KEGG: Spty2d1, RGD1560454_predicted; SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae).
  
     0.755
Plim_1668
KEGG: ade:Adeh_2066 hypothetical protein.
  
     0.722
Plim_2128
Bacteriophage capsid protein-like protein; KEGG: xfa:XF0510 hypothetical protein.
  
     0.705
Plim_2131
KEGG: nme:NMB1094 hypothetical protein.
  
     0.704
Plim_0456
SMART: Parallel beta-helix repeat; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel.
  
     0.703
Plim_2612
Sugar isomerase (SIS).
  
     0.692
Plim_3846
Parallel beta-helix repeat protein; KEGG: hypothetical protein LOC100134400.
  
     0.673
Plim_4208
Tetratricopeptide TPR_2 repeat protein.
  
     0.664
Plim_3354
TPR repeat-containing protein.
  
     0.657
Plim_3818
Oxidoreductase domain protein; KEGG: hypothetical protein.
  
     0.643
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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