Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_3877Glycosyl transferase family 2; KEGG: hypothetical protein LOC100150481. (393 aa)    
Predicted Functional Partners:
Plim_3136
Undecaprenyl-phosphate galactose phosphotransferase.
   
 0.904
Plim_3878
Glycosyltransferase-like protein; KEGG: proteophosphoglycan ppg4.
       0.782
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
 
 0.714
Plim_3879
Polysaccharide deacetylase.
 
  
 0.660
Plim_3880
Glycosyl transferase group 1; KEGG: proteophosphoglycan 5.
 
     0.651
Plim_2555
Tetratricopeptide TPR_2 repeat protein.
 
 
 0.585
Plim_3875
Endonuclease/exonuclease/phosphatase; KEGG: hypothetical protein LOC100150481.
 
    0.582
Plim_0677
PFAM: polysaccharide deacetylase; KEGG: cps:CPS_5022 polysaccharide deacetylase family protein.
 
  
 0.576
Plim_2762
PAS sensor protein.
  
  
 0.572
Plim_3885
O-antigen polymerase; KEGG: proteophosphoglycan ppg4.
 
   
 0.563
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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