Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3884Hypothetical protein; KEGG: proteophosphoglycan ppg4. (420 aa)    
Predicted Functional Partners:
Plim_3885
O-antigen polymerase; KEGG: proteophosphoglycan ppg4.
 
     0.925
Plim_3883
Glycosyl transferase group 1; KEGG: proteophosphoglycan ppg4.
 
     0.784
Plim_3354
TPR repeat-containing protein.
  
     0.722
Plim_3647
Hypothetical protein.
  
     0.695
Plim_2836
KEGG: hypothetical protein LOC714502.
  
     0.692
Plim_1805
Hypothetical protein.
  
     0.670
Plim_3669
Polysaccharide biosynthesis protein.
 
    0.668
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
  
     0.625
Plim_1336
Membrane protein-like protein.
  
     0.622
Plim_2781
Hypothetical protein.
  
     0.616
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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