STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3897KEGG: hypothetical protein LOC100134320. (477 aa)    
Predicted Functional Partners:
Plim_1736
PFAM: Calcium/calmodulin dependent protein kinase II association-domain protein; KEGG: hypothetical protein.
 
      0.898
Plim_2087
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: afw:Anae109_0777 protein phosphatase 2C-like protein.
 
 
 0.848
Plim_2397
PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pna:Pnap_3950 protein phosphatase 2C domain protein.
 
 
 0.846
Plim_0622
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; KEGG: scl:sce5670 alpha-ketoglutarate decarboxylase.
    
 
 0.547
Plim_0575
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD-40 repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: hypothetical protein.
 
 
 
0.535
Plim_2188
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: BRCT domain protein; Tetratricopeptide domain protein; KEGG: scl:sce3861 MerR family transcriptional regulator.
  
 
 0.518
Plim_2762
PAS sensor protein.
  
 
 0.455
Plim_2445
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function DUF323; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: bha:BH2504 serine/threonine protein kinase.
 
 
0.446
Plim_3456
Serine/threonine protein kinase-related protein.
 
 
 
0.424
Plim_0987
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD-40 repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: sus:Acid_3680 serine/threonine protein kinase.
 
 
 
0.419
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.