STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3899Peptidase M28. (674 aa)    
Predicted Functional Partners:
Plim_3729
WD40 domain protein beta Propeller.
    0.970
Plim_1781
KEGG: pat:Patl_4270 putative Zn-dependent aminopeptidase.
 
 
 0.687
Plim_2538
PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ilo:IL2328 dipeptidyl aminopeptidase.
  
    0.633
Plim_0588
Prolyl oligopeptidase; PFAM: protein of unknown function DUF885; peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta- propeller; KEGG: aba:Acid345_0615 Prolyl oligopeptidase. Serine peptidase. MEROPS family S09A.
 
     0.599
Plim_2188
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: BRCT domain protein; Tetratricopeptide domain protein; KEGG: scl:sce3861 MerR family transcriptional regulator.
   
 
 0.583
Plim_3912
Peptidase S9 prolyl oligopeptidase active site domain protein.
  
    0.581
Plim_0192
PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: spl:Spea_0137 peptidase M14 carboxypeptidase A.
  
     0.563
Plim_2039
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sbm:Shew185_2868 amidohydrolase.
  
   
 0.501
Plim_3310
Conserved hypothetical protein.
  
     0.496
Plim_1012
PFAM: peptidase T2 asparaginase 2; KEGG: smt:Smal_0741 peptidase T2 asparaginase 2.
  
    0.495
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.