Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_3932Dual specificity protein phosphatase. (202 aa)    
Predicted Functional Partners:
Plim_0527
Hypothetical protein; KEGG: rru:Rru_A0837 leucine-rich repeat-containing protein.
    
 
 0.720
Plim_0620
Hypothetical protein; KEGG: mxa:MXAN_4062 leucine-rich repeat domain protein.
    
 
 0.720
Plim_2686
Hypothetical protein.
    
 
 0.720
Plim_1451
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5038 WD-40 repeat-containing protein.
   
 0.713
Plim_3221
Metallophosphoesterase.
    
 
 0.660
Plim_2087
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: afw:Anae109_0777 protein phosphatase 2C-like protein.
    
 
 0.621
Plim_2397
PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pna:Pnap_3950 protein phosphatase 2C domain protein.
    
 
 0.621
Plim_0720
PFAM: phosphatidate cytidylyltransferase; KEGG: plu:plu4775 hypothetical protein.
  
    0.599
Plim_3315
Phosphatidate cytidylyltransferase.
  
    0.599
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
    
  0.481
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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