STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_3941Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen. (871 aa)    
Predicted Functional Partners:
Plim_1666
PFAM: isochorismatase hydrolase; KEGG: sus:Acid_1892 isochorismatase hydrolase.
  
     0.749
Plim_0259
Hypothetical protein; KEGG: acp:A2cp1_0259 tetratricopeptide TPR_2 repeat protein.
  
     0.712
Plim_4107
Hypothetical protein.
  
     0.698
Plim_3628
FG-GAP repeat protein.
  
    0.692
Plim_1436
Heme-binding protein; KEGG: cti:RALTA_B2024 conserved hypothetical protein, PBS lyase heat-like repeat; TIGRFAM: heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein.
  
    0.663
Plim_4194
Tetratricopeptide TPR_2 repeat protein.
  
     0.642
Plim_2485
PFAM: Protein of unknown function DUF1588; PA14 domain protein; Protein of unknown function DUF1592; SMART: PA14 domain protein; KEGG: scl:sce1022 hypothetical protein.
  
 
   0.580
Plim_1274
KEGG: scl:sce4409 hypothetical protein.
  
     0.578
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
  
     0.573
Plim_0258
SMART: Pyrrolo-quinoline quinone; KEGG: hne:HNE_0773 PQQ repeat-containing protein.
  
     0.571
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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