Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_3945Protein of unknown function DUF1080; KEGG: bte:BTH_II2095 diaminopimelate decarboxylase, putative. (540 aa)    
Predicted Functional Partners:
Plim_1708
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_6142 hypothetical protein.
  
     0.768
Plim_2356
PFAM: protein of unknown function DUF1080; KEGG: pnu:Pnuc_1112 hypothetical protein.
  
     0.759
Plim_2857
Oxidoreductase domain protein.
  
     0.726
Plim_1642
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7683 xylose isomerase domain- containing protein.
 
     0.718
Plim_0006
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6296 oxidoreductase domain- containing protein.
  
     0.699
Plim_4053
Protein of unknown function DUF1080.
  
     0.681
Plim_2385
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.664
Plim_0046
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_4919 hypothetical protein.
  
     0.660
Plim_2951
nucleoside:H symporter.
  
     0.635
Plim_1812
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_4711 oxidoreductase domain- containing protein.
  
     0.628
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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