STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3971Protein of unknown function DUF1549. (759 aa)    
Predicted Functional Partners:
Plim_3972
Protein of unknown function DUF1501.
 
     0.894
Plim_3983
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.853
Plim_3989
Cytochrome c oxidase, subunit II.
  
 
 0.845
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
 
     0.804
Plim_1448
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5041 hypothetical protein.
 
     0.788
Plim_4095
Protein of unknown function DUF1501.
 
     0.785
Plim_1262
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5708 hypothetical protein.
  
     0.775
Plim_1150
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5708 hypothetical protein.
  
     0.774
Plim_1827
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5041 hypothetical protein.
  
     0.769
Plim_1728
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_3761 hypothetical protein.
  
     0.768
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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