STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3977TPR repeat-containing protein; KEGG: SRRM2; serine/arginine repetitive matrix 2. (716 aa)    
Predicted Functional Partners:
Plim_3978
Protein of unknown function DUF374.
       0.603
Plim_2933
Sulphate transporter.
  
     0.539
Plim_1916
PFAM: type II secretion system protein; KEGG: rso:RSc0650 putative tight adherence TadC- related transmembrane protein.
 
  
 0.475
Plim_3979
Hypothetical protein.
       0.446
Plim_0237
PFAM: ATP-binding region ATPase domain protein; GAF domain protein; Forkhead-associated protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; Forkhead-associated protein; KEGG: scl:sce0793 two-component histidine kinase.
 
  
 0.445
Plim_0795
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: vpa:VP2420 putative pilus assembly protein.
 
  
 0.436
Plim_1917
PFAM: type II secretion system protein; KEGG: pca:Pcar_1753 Flp pilus assembly protein TadB.
 
  
 0.434
Plim_1813
PFAM: type II secretion system protein; KEGG: sat:SYN_01499 flp pilus assembly protein.
 
  
 0.429
Plim_3976
Hypothetical protein.
       0.412
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.