STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3982Cytochrome c family protein. (253 aa)    
Predicted Functional Partners:
Plim_3983
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
 
 
 0.989
Plim_3984
Polysulphide reductase NrfD.
 
 
 
 0.965
Plim_3986
Conserved hypothetical protein.
 
   0.944
Plim_0423
PFAM: Rieske [2Fe-2S] domain protein; KEGG: scl:sce0366 hypothetical protein.
  
 0.929
Plim_3991
Cytochrome c oxidase subunit III.
 
 0.879
Plim_3985
Hypothetical protein.
 
 
   0.858
Plim_0424
PFAM: Cytochrome b/b6 domain; KEGG: scl:sce0365 cytochrome b6.
  
 0.843
Plim_3989
Cytochrome c oxidase, subunit II.
 
 
 0.841
Plim_3988
Electron transport protein SCO1/SenC.
 
   
 0.825
Plim_3053
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 
 0.788
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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