STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3984Polysulphide reductase NrfD. (478 aa)    
Predicted Functional Partners:
Plim_3983
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
 
 0.999
Plim_3986
Conserved hypothetical protein.
 
 
 0.974
Plim_3982
Cytochrome c family protein.
 
 
 
 0.965
Plim_3053
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 0.963
Plim_3985
Hypothetical protein.
 
   0.950
Plim_3989
Cytochrome c oxidase, subunit II.
 
 
 
 0.948
Plim_1366
TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: sde:Sde_2411 histidine kinase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.891
Plim_3988
Electron transport protein SCO1/SenC.
 
     0.840
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.822
Plim_3991
Cytochrome c oxidase subunit III.
 
   
 0.770
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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