STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4004ABC transporter related protein. (639 aa)    
Predicted Functional Partners:
Plim_4006
Extracellular solute-binding protein family 1.
 
     0.902
Plim_4003
Protein of unknown function DUF1355.
 
     0.882
Plim_3184
Sulfate ABC transporter, inner membrane subunit CysW.
  
 0.852
Plim_3185
Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.
  
 0.851
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.832
Plim_3186
Sulfate ABC transporter, periplasmic sulfate- binding protein.
  
  
 0.830
Plim_3056
FAD-binding domain protein.
  
  
 0.825
Plim_2758
Sulfite reductase (NADPH); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.808
Plim_3055
precorrin-3B synthase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.808
Plim_1206
Hypothetical protein; KEGG: similar to Stretchin-Mlck CG18255-PA, isoform A.
 
     0.787
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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